Protein ZmOrphan1
ZmOrphan1 is a protein in the Orphans family.
Information
Orphans Name: ZmOrphan1
Species: Maize
Orphans Family: Orphans
Gene Name(Synonym):
Uniprot ID: A0A1D6PDQ1
Subgenome: 1

Protein ZmOrphan1

ZmOrphan1 is a protein in the Orphans family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.

Overview of domains present in v5 transcripts
PF00481
Zm00001eb071240_T003
Zm00001eb071240_T001
Zm00001eb071240_T002

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs


Gene IDTypeMEME LogoSequenceFIMOPosition
Zm00001d002369DAPseq no logo sequence fimo position
Zm00001d002369DAPseq no logo sequence fimo position
Zm00001d002369ChIPseq no logo sequence fimo position
Zm00001d002369PChIPseq no logo sequence fimo position

Interactions where ZmOrphan1 is the regulator


There are no protein-dna interactions that fit this criteria.

Interactions where ZmOrphan1 is the target  
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There are 123 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb071240_T003 from maize genome v5

Amino Acid Sequence
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MVGRMERQTASSSASCSSSSSSSSVCGGKKRPDILNMIRNAACLNSSSTDTGKGRSKLSTNKVTHGFHLVEGKSGHGMED
YHVAEYKYVKNHELGLFAIFDGHLGDKVPSYLKANLFSNIMKEPLFWSSPEEAIKNAYCSTNKYILENGKQLGPGGSTAV
TAIVVDGKDMLIANVGDSRAVVCEMGSANQLTVDHEPDTTEERQRIEKHGGFVTTFPGDVPRVNGQLAVARAFGDQSLKA
HLSSKPDTRHVPIDSSIEFVILASDGLWKVMKNQEAVDLVKSIKDPKAAAKRLTTEALARKSKDDISCIVIRFRC

MVGRMERQTASSSASCSSSSSSSSVCGGKKRPDILNMIRNAACLNSSSTDTGKGRSKLSTNKVTHGFHLVEGKSGHGMED
YHVAEYKYVKNHELGLFAIFDGHLGDKVPSYLKANLFSNIMKEPLFWSSPEEAIKNAYCSTNKYILENGKQLGPGGSTAV
TAIVVDGKDMLIANVGDSRAVVCEMGSANQLTVDHEPDTTEERQRIEKHGGFVTTFPGDVPRVNGQLAVARAFGDQSLKA
HLSSKPDTRHVPIDSSIEFVILASDGLWKVMKNQEAVDLVKSIKDPKAAAKRLTTEALARKSKDDISCIVIRFRC

MVGRMERQTASSSASCSSSSSSSSVCGGKKRPDILNMIRNAACLNSSSTDTGKGRSKLSTNKVTHGFHLVEGKSGHGMED
YHVAEYKYVKNHELGLFAIFDGHLGDKVPSYLKANLFSNIMKEPLFWSSPEEAIKNAYCSTNKYILENGKQLGPGGSTAV
TAIVVDGKDMLIANVGDSRAVVCEMGSANQLTVDHEPDTTEERQRIEKHGGFVTTFPGDVPRVNGQLAVARAFGDQSLKA
HLSSKPDTRHVPIDSSIEFVILASDGLWKVMKNQEAVDLVKSIKDPKAAAKRLTTEALARKSKDDISCIVIRFRC

MVGRMERQTASSSASCSSSSSSSSVCGGKKRPDILNMIRNAACLNSSSTDTGKGRSKLSTNKVTHGFHLVEGKSGHGMED
YHVAEYKYVKNHELGLFAIFDGHLGDKVPSYLKANLFSNIMKEPLFWSSPEEAIKNAYCSTNKYILENGKQLGPGGSTAV
TAIVVDGKDMLIANVGDSRAVVCEMGSANQLTVDHEPDTTEERQRIEKHGGFVTTFPGDVPRVNGQLAVARAFGDQSLKA
HLSSKPDTRHVPIDSSIEFVILASDGLWKVMKNQEAVDLVKSIKDPKAAAKRLTTEALARKSKDDISCIVIRFRC

MVGRMERQTASSSASCSSSSSSSSVCGGKKRPDILNMIRNAACLNSSSTDTGKGRSKLSTNKVTHGFHLVEGKSGHGMED
YHVAEYKYVKNHELGLFAIFDGHLGDKVPSYLKANLFSNIMKEPLFWSSPEEAIKNAYCSTNKYILENGKQLGPGGSTAV
TAIVVDGKDMLIANVGDSRAVVCEMGSANQLTVDHEPDTTEERQRIEKHGGFVTTFPGDVPRVNGQLAVARAFGDQSLKA
HLSSKPDTRHVPIDSSIEFVILASDGLWKVMKNQEAVDLVKSIKDPKAAAKRLTTEALARKSKDDISCIVIRFRC

Secondary Structure Color Code
BEND region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P left-handed polyproline helix
HELX_RH_3T_P right-handed 3-10 helix
HELX_RH_AL_P right-handed alpha helix
HELX_RH_PI_P right-handed pi helix
STRN beta strand
TURN_TY1_P type I turn
UNDETERMINED no data available
Domains Present
PF00481
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Nucleotide Sequence
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AACGGATCAAAGAGCAAGCGACGGG...

GRMZM2G111232_T01 from maize genome v3


Related TFome: pUT6660

Amino Acid Sequence
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MVGRMERQTASSSASCSSSSSSSSVCGGKKRPDILNMIRNAACLNSSSTDTGKGRSKLSTNKVTHGFHLVEGKSGHGMED
YHVAEYKYVKNHELGLFAIFDGHLGDKVPSYLKANLFSNIMKEPLFWSSPEEAIKNAYCSTNKYILENGKQLGPGGSTAV
TAIVVDGKDMLIANVGDSRAVVCEMGSANQLTVDHEPDTTEERQRIEKHGGFVTTFPGDVPRVNGQLAVARAFGDQSLKA
HLSSKPDTRHVPIDSSIEFVILASDGLWKVMKNQEAVDLVKSIKDPKAAAKRLTTEALARKSKDDISCIVIRFRC

Nucleotide Sequence
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CCTCTCTCTCTCTCCATCTCCTTCA...

GRMZM2G111232_T02 from maize genome v3

Amino Acid Sequence
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MVGRMERQTASSSASCSSSSSSSSVCGGKKRPDILNMIRNAACLNSSSTDTGKGRSKLSTNKVTHGFHLVEGKSGHGMED
YHVAEYKYVKNHELGLFAIFDGHLGDKVPSYLKANLFSNIMKEPLFWSSPEEAIKNAYCSTNKYILENGKQLGPGGSTAV
TAIVVDGKDMLIANVGDSRAVVCEMGSANQLTVDHEPDTTEERQRIEKHGGFVTTFPGDVPRVNGQLAVARAFGDQSLKA
HLSSKPDTRHVPIDSSIEFVILASDGLWKVMKNQEAVDLVKSIKDPKAAAKRLTTEALARKSKDDISCIVIRFRC

Nucleotide Sequence
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ATCTCCTTCACGCCACACCACAAGT...

Zm00001d002369_T001 from maize genome v4

Amino Acid Sequence
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MVGRMERQTASSSASCSSSSSSSSVCGGKKRPDILNMIRNAACLNSSSTDTGKGRSKLSTNKVTHGFHLVEGKSGHGMED
YHVAEYKYVKNHELGLFAIFDGHLGDKVPSYLKANLFSNIMKEPLFWSSPEEAIKNAYCSTNKYILENGKQLGPGGSTAV
TAIVVDGKDMLIANVGDSRAVVCEMGSANQLTVDHEPDTTEERQRIEKHGGFVTTFPGDVPRVNGQLAVARAFGDQSLKA
HLSSKPDTRHVPIDSSIEFVILASDGLWKVMKNQEAVDLVKSIKDPKAAAKRLTTEALARKSKDDISCIVIRFRC

Nucleotide Sequence
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CGCCCTCTCTCTCTCTCCATCTCCT...

Zm00001d002369_T002 from maize genome v4

Amino Acid Sequence
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MVGRMERQTASSSASCSSSSSSSSVCGGKKRPDILNMIRNAACLNSSSTDTGKGRSKLSTNKVTHGFHLVEGKSGHGMED
YHVAEYKYVKNHELGLFAIFDGHLGDKVPSYLKANLFSNIMKEPLFWSSPEEAIKNAYCSTNKYILENGKQLGPGGSTAV
TAIVVDGKDMLIANVGDSRAVVCEMGSANQLTVDHEPDTTEERQRIEKHGGFVTTFPGDVPRVNGQLAVARAFGDQSLKA
HLSSKPDTRHVPIDSSIEFVILASDGLWKVMKNQEAVDLVKSIKDPKAAAKRLTTEALARKSKDDISCIVIRFRC

Nucleotide Sequence
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ACGCCACACCACAAGTGTCGAAACG...

Zm00001d002369_T003 from maize genome v4

Amino Acid Sequence
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MVGRMERQTASSSASCSSSSSSSSVCGGKKRPDILNMIRNAACLNSSSTDTGKGRSKLSTNKVTHGFHLVEGKSGHGMED
YHVAEYKYVKNHELGLFAIFDGHLGDKVPSYLKANLFSNIMKEPLFWSSPEEAIKNAYCSTNKYILENGKQLGPGGSTAV
TAIVVDGKDMLIANVGDSRAVVCEMGSANQLTVDHEPDTTEERQRIEKHGGFVTTFPGDVPRVNGQLAVARAFGDQSLKA
HLSSKPDTRHVPIDSSIEFVILASDGLWKVMKNQEAVDLVKSIKDPKAAAKRLTTEALARKSKDDISCIVIRFRC

Nucleotide Sequence
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ACGCCACACCACAAGTGTCGAAACG...

Zm00001d002369_T004 from maize genome v4

Amino Acid Sequence
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MEDYHVAEYKYVKNHELGLFAIFDGHLGDKVPSYLKANLFSNIMKEPLFWSSPEEAIKNAYCSTNKYILENGKQLGPGGS
TAVTAIVVDGKDMLIANVGDSRAVVCEMGSANQLTVDHEPDTTEERQRIEKHGGFVTTFPGDVPRVNGQLAVARAFGDQS
LKAHLSSKPDTRHVPIDSSIEFVILASDGLWKVMKNQEAVDLVKSIKDPKAAAKRLTTEALARKSKDDISCIVIRFRC

Nucleotide Sequence
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ATACAGAATGCAGCCTGTCTTAATT...

Zm00001eb071240_T001 from maize genome v5

Amino Acid Sequence
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MVGRMERQTASSSASCSSSSSSSSVCGGKKRPDILNMIRNAACLNSSSTDTGKGRSKLSTNKVTHGFHLVEGKSGHGMED
YHVAEYKYVKNHELGLFAIFDGHLGDKVPSYLKANLFSNIMKEPLFWSSPEEAIKNAYCSTNKYILENGKQLGPGGSTAV
TAIVVDGKDMLIANVGDSRAVVCEMGSANQLTVDHEPDTTEERQRIEKHGGFVTTFPGDVPRVNGQLAVARAFGDQSLKA
HLSSKPDTRHVPIDSSIEFVILASDGLWKVMKNQEAVDLVKSIKDPKAAAKRLTTEALARKSKDDISCIVIRFRC

Nucleotide Sequence
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CCGCTGTGGGCCCTACTTCCCGCGG...

Zm00001eb071240_T002 from maize genome v5

Amino Acid Sequence
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MVGRMERQTASSSASCSSSSSSSSVCGGKKRPDILNMIRNAACLNSSSTDTGKGRSKLSTNKVTHGFHLVEGKSGHGMED
YHVAEYKYVKNHELGLFAIFDGHLGDKVPSYLKANLFSNIMKEPLFWSSPEEAIKNAYCSTNKYILENGKQLGPGGSTAV
TAIVVDGKDMLIANVGDSRAVVCEMGSANQLTVDHEPDTTEERQRIEKHGGFVTTFPGDVPRVNGQLAVARAFGDQSLKA
HLSSKPDTRHVPIDSSIEFVILASDGLWKVMKNQEAVDLVKSIKDPKAAAKRLTTEALARKSKDDISCIVIRFRC

Nucleotide Sequence
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CCGCTGTGGGCCCTACTTCCCGCGG...


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